3D structure

PDB id
8VOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
6 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
8VOP|1|a|U|321
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8VOP_021 not in the Motif Atlas
Geometric match to J3_5J7L_068
Geometric discrepancy: 0.0472
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8VOP|1|a|G|297
8VOP|1|a|G|298
8VOP|1|a|A|299
8VOP|1|a|A|300
8VOP|1|a|G|301
*
8VOP|1|a|C|316
8VOP|1|a|G|317
8VOP|1|a|C|318
8VOP|1|a|G|319
8VOP|1|a|A|320
8VOP|1|a|U|321
8VOP|1|a|A|322
8VOP|1|a|C|323
8VOP|1|a|A|324
8VOP|1|a|G|325
*
8VOP|1|a|C|337
8VOP|1|a|G|338
8VOP|1|a|U|339
8VOP|1|a|A|340
8VOP|1|a|C|341

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L24
Chain l
50S ribosomal protein L4

Coloring options:


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