J3_8VOP_022

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8VOP|1|a|U|686, 8VOP|1|a|A|792, 8VOP|1|a|A|793

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOP_022 not in the Motif Atlas

Geometric match to J3_5J7L_038

Geometric discrepancy: 0.0547

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8VOP|1|a|U|683
8VOP|1|a|G|684
8VOP|1|a|A|685
8VOP|1|a|U|686
8VOP|1|a|C|687
8VOP|1|a|U|688
8VOP|1|a|A|689
*
8VOP|1|a|U|773
8VOP|1|a|G|774
8VOP|1|a|G|775
*
8VOP|1|a|C|791
8VOP|1|a|A|792
8VOP|1|a|A|793
8VOP|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34