J3_8VOP_023

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOP_023 not in the Motif Atlas

Geometric match to J3_5J7L_039

Geometric discrepancy: 0.053

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8VOP|1|a|C|698
8VOP|1|a|A|699
8VOP|1|a|G|700
*
8VOP|1|a|C|732
8VOP|1|a|G|733
8VOP|1|a|A|734
8VOP|1|a|A|735
8VOP|1|a|C|736
*
8VOP|1|a|G|760
8VOP|1|a|A|761
8VOP|1|a|U|762
8VOP|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2