J3_8VOP_024

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGGA*UUUAAAG*CACU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|A|1054
8VOP|1|a|G|1055
8VOP|1|a|G|1056
8VOP|1|a|A|1057
*
8VOP|1|a|U|1081
8VOP|1|a|U|1082
8VOP|1|a|U|1083
8VOP|1|a|A|1084
8VOP|1|a|A|1085
8VOP|1|a|A|1086
8VOP|1|a|G|1087
*
8VOP|1|a|C|1102
8VOP|1|a|A|1103
8VOP|1|a|C|1104
8VOP|1|a|U|1105

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain Y

50S ribosomal protein L11

Chain q

50S ribosomal protein L36