J3_8VOP_032

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8VOP|1|a|A|2518, 8VOP|1|a|U|2519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOP_032 not in the Motif Atlas

Geometric match to J3_5J7L_046

Geometric discrepancy: 0.0573

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8VOP|1|a|C|2517
8VOP|1|a|A|2518
8VOP|1|a|U|2519
8VOP|1|a|C|2520
*
8VOP|1|a|G|2545
8VOP|1|a|U|2546
8VOP|1|a|A|2547
*
8VOP|1|a|U|2561
8VOP|1|a|U|2562
8VOP|1|a|U|2563
8VOP|1|a|A|2564
8VOP|1|a|A|2565
8VOP|1|a|A|2566
8VOP|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14