J3_8VOP_035
3D structure
- PDB id
- 8VOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8VOP|1|d|U|14, 8VOP|1|d|A|108
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VOP_035 not in the Motif Atlas
- Geometric match to J3_5J7L_049
- Geometric discrepancy: 0.0973
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8VOP|1|d|G|10
8VOP|1|d|C|11
8VOP|1|d|C|12
8VOP|1|d|G|13
8VOP|1|d|U|14
8VOP|1|d|A|15
8VOP|1|d|G|16
*
8VOP|1|d|C|68
8VOP|1|d|G|69
8VOP|1|d|C|70
*
8VOP|1|d|G|106
8VOP|1|d|G|107
8VOP|1|d|A|108
8VOP|1|d|A|109
8VOP|1|d|C|110
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L25
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain b
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L18
Coloring options: