J3_8VOQ_016

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8VOQ|1|D|U|1240, 8VOQ|1|D|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOQ_016 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.1208

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8VOQ|1|D|C|1237
8VOQ|1|D|A|1238
8VOQ|1|D|A|1239
8VOQ|1|D|U|1240
8VOQ|1|D|G|1241
*
8VOQ|1|D|C|1296
8VOQ|1|D|G|1297
8VOQ|1|D|U|1298
8VOQ|1|D|A|1299
8VOQ|1|D|G|1300
8VOQ|1|D|U|1301
8VOQ|1|D|C|1302
8VOQ|1|D|C|1303
*
8VOQ|1|D|G|1334
8VOQ|1|D|U|1335
8VOQ|1|D|C|1336
8VOQ|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain X

30S ribosomal protein S13