3D structure

PDB id
8VOQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.3 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
8VOQ|1|a|A|504, 8VOQ|1|a|A|508
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8VOQ_018 not in the Motif Atlas
Geometric match to J3_5J7L_066
Geometric discrepancy: 0.05
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8VOQ|1|a|G|30
8VOQ|1|a|C|31
*
8VOQ|1|a|G|474
8VOQ|1|a|C|475
8VOQ|1|a|G|476
8VOQ|1|a|A|477
8VOQ|1|a|A|478
8VOQ|1|a|A|479
8VOQ|1|a|A|480
8VOQ|1|a|G|481
8VOQ|1|a|A|482
8VOQ|1|a|A|483
8VOQ|1|a|C|484
*
8VOQ|1|a|G|496
8VOQ|1|a|A|497
8VOQ|1|a|G|498
8VOQ|1|a|U|499
8VOQ|1|a|G|500
8VOQ|1|a|A|501
8VOQ|1|a|A|502
8VOQ|1|a|A|503
8VOQ|1|a|A|504
8VOQ|1|a|A|505
8VOQ|1|a|G|506
8VOQ|1|a|A|507
8VOQ|1|a|A|508
8VOQ|1|a|C|509
8VOQ|1|a|C|510

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain 3
50S ribosomal protein L24
Chain z
50S ribosomal protein L20

Coloring options:


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