J3_8VOQ_029

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

8VOQ|1|a|A|2198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOQ_029 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.0842

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8VOQ|1|a|C|2091
8VOQ|1|a|U|2092
8VOQ|1|a|G|2093
*
8VOQ|1|a|C|2196
8VOQ|1|a|U|2197
8VOQ|1|a|A|2198
8VOQ|1|a|A|2199
8VOQ|1|a|C|2200
*
8VOQ|1|a|G|2223
8VOQ|1|a|G|2224
8VOQ|1|a|A|2225
8VOQ|1|a|C|2226
8VOQ|1|a|A|2227
8VOQ|1|a|G|2228

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain h

50S ribosomal protein L2

Chain r

50S ribosomal protein L9