J3_8VOR_020

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

8VOR|1|a|U|72, 8VOR|1|a|A|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOR_020 not in the Motif Atlas

Geometric match to J3_5J7L_037

Geometric discrepancy: 0.0468

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8VOR|1|a|A|56
8VOR|1|a|C|57
*
8VOR|1|a|G|70
8VOR|1|a|A|71
8VOR|1|a|U|72
8VOR|1|a|A|73
8VOR|1|a|A|74
8VOR|1|a|G|75
8VOR|1|a|C|76
*
8VOR|1|a|G|110
8VOR|1|a|A|111
8VOR|1|a|U|112
8VOR|1|a|U|113
8VOR|1|a|U|114

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain e

50S ribosomal protein L29

Chain m

50S ribosomal protein L34