J3_8VOR_021

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8VOR|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOR_021 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.0472

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VOR|1|a|G|297
8VOR|1|a|G|298
8VOR|1|a|A|299
8VOR|1|a|A|300
8VOR|1|a|G|301
*
8VOR|1|a|C|316
8VOR|1|a|G|317
8VOR|1|a|C|318
8VOR|1|a|G|319
8VOR|1|a|A|320
8VOR|1|a|U|321
8VOR|1|a|A|322
8VOR|1|a|C|323
8VOR|1|a|A|324
8VOR|1|a|G|325
*
8VOR|1|a|C|337
8VOR|1|a|G|338
8VOR|1|a|U|339
8VOR|1|a|A|340
8VOR|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4