J3_8VOR_023

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOR_023 not in the Motif Atlas

Geometric match to J3_5J7L_039

Geometric discrepancy: 0.0531

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8VOR|1|a|C|698
8VOR|1|a|A|699
8VOR|1|a|G|700
*
8VOR|1|a|C|732
8VOR|1|a|G|733
8VOR|1|a|A|734
8VOR|1|a|A|735
8VOR|1|a|C|736
*
8VOR|1|a|G|760
8VOR|1|a|A|761
8VOR|1|a|U|762
8VOR|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2