J3_8VOR_024

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGA*UUUAAAG*CACU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|a|A|1054
8VOR|1|a|G|1055
8VOR|1|a|G|1056
8VOR|1|a|A|1057
*
8VOR|1|a|U|1081
8VOR|1|a|U|1082
8VOR|1|a|U|1083
8VOR|1|a|A|1084
8VOR|1|a|A|1085
8VOR|1|a|A|1086
8VOR|1|a|G|1087
*
8VOR|1|a|C|1102
8VOR|1|a|A|1103
8VOR|1|a|C|1104
8VOR|1|a|U|1105

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain Y

50S ribosomal protein L11

Chain q

50S ribosomal protein L36