J3_8VOR_032

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8VOR|1|a|A|2518, 8VOR|1|a|U|2519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOR_032 not in the Motif Atlas

Geometric match to J3_5J7L_046

Geometric discrepancy: 0.0574

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8VOR|1|a|C|2517
8VOR|1|a|A|2518
8VOR|1|a|U|2519
8VOR|1|a|C|2520
*
8VOR|1|a|G|2545
8VOR|1|a|U|2546
8VOR|1|a|A|2547
*
8VOR|1|a|U|2561
8VOR|1|a|U|2562
8VOR|1|a|U|2563
8VOR|1|a|A|2564
8VOR|1|a|A|2565
8VOR|1|a|A|2566
8VOR|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14