J3_8VOS_016

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8VOS|1|D|U|1240, 8VOS|1|D|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOS_016 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.1207

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8VOS|1|D|C|1237
8VOS|1|D|A|1238
8VOS|1|D|A|1239
8VOS|1|D|U|1240
8VOS|1|D|G|1241
*
8VOS|1|D|C|1296
8VOS|1|D|G|1297
8VOS|1|D|U|1298
8VOS|1|D|A|1299
8VOS|1|D|G|1300
8VOS|1|D|U|1301
8VOS|1|D|C|1302
8VOS|1|D|C|1303
*
8VOS|1|D|G|1334
8VOS|1|D|U|1335
8VOS|1|D|C|1336
8VOS|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS7

Chain X

Small ribosomal subunit protein uS13