J3_8VPK_010

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VPK_010 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.3832

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8VPK|1|A|G|1173
8VPK|1|A|G|1174
8VPK|1|A|A|1175
*
8VPK|1|A|U|1199
8VPK|1|A|U|1200
8VPK|1|A|G|1201
8VPK|1|A|A|1202
8VPK|1|A|A|1203
8VPK|1|A|A|1204
8VPK|1|A|G|1205
*
8VPK|1|A|C|1220
8VPK|1|A|A|1221
8VPK|1|A|C|1222

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11