J3_8VPK_012

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8VPK|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VPK_012 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1149

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8VPK|1|A|C|1421
8VPK|1|A|A|1422
8VPK|1|A|A|1423
8VPK|1|A|G|1424
*
8VPK|1|A|C|1823
8VPK|1|A|C|1824
8VPK|1|A|C|1825
8VPK|1|A|A|1826
8VPK|1|A|A|1827
8VPK|1|A|A|1828
8VPK|1|A|C|1829
*
8VPK|1|A|G|1838
8VPK|1|A|U|1839
8VPK|1|A|G|1840

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34