J3_8VPK_013
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UCGGGAC*GACAA*UA
- Length
- 14 nucleotides
- Bulged bases
- 8VPK|1|A|C|1460, 8VPK|1|A|A|1499
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VPK_013 not in the Motif Atlas
- Homologous match to J3_9DFE_012
- Geometric discrepancy: 0.1487
- The information below is about J3_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8VPK|1|A|U|1459
8VPK|1|A|C|1460
8VPK|1|A|G|1461
8VPK|1|A|G|1462
8VPK|1|A|G|1463
8VPK|1|A|A|1464
8VPK|1|A|C|1465
*
8VPK|1|A|G|1496
8VPK|1|A|A|1497
8VPK|1|A|C|1498
8VPK|1|A|A|1499
8VPK|1|A|A|1500
*
8VPK|1|A|U|1517
8VPK|1|A|A|1518
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain U
- 50S Ribosomal Protein L23
Coloring options: