J3_8VPK_015

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

8VPK|1|A|A|1648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VPK_015 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.4634

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8VPK|1|A|G|1645
8VPK|1|A|U|1646
8VPK|1|A|G|1647
8VPK|1|A|A|1648
8VPK|1|A|C|1649
8VPK|1|A|G|1650
*
8VPK|1|A|C|1784
8VPK|1|A|C|1785
*
8VPK|1|A|G|1788
8VPK|1|A|A|1789
8VPK|1|A|A|1790
8VPK|1|A|A|1791
8VPK|1|A|A|1792
8VPK|1|A|G|1793
8VPK|1|A|C|1794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2