J3_8VR4_006
3D structure
- PDB id
- 8VR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAA*UGCCGUAGAC*GGUAC
- Length
- 20 nucleotides
- Bulged bases
- 8VR4|1|A|U|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VR4_006 not in the Motif Atlas
- Homologous match to J3_4WF9_015
- Geometric discrepancy: 0.1181
- The information below is about J3_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VR4|1|A|G|378
8VR4|1|A|G|379
8VR4|1|A|A|380
8VR4|1|A|A|381
8VR4|1|A|A|382
*
8VR4|1|A|U|398
8VR4|1|A|G|399
8VR4|1|A|C|400
8VR4|1|A|C|401
8VR4|1|A|G|402
8VR4|1|A|U|403
8VR4|1|A|A|404
8VR4|1|A|G|405
8VR4|1|A|A|406
8VR4|1|A|C|407
*
8VR4|1|A|G|419
8VR4|1|A|G|420
8VR4|1|A|U|421
8VR4|1|A|A|422
8VR4|1|A|C|423
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S Ribosomal Protein L4
- Chain V
- 50S ribosomal protein L24
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