J3_8VR4_012

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

8VR4|1|A|C|1460, 8VR4|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VR4_012 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1364

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8VR4|1|A|U|1459
8VR4|1|A|C|1460
8VR4|1|A|G|1461
8VR4|1|A|G|1462
8VR4|1|A|G|1463
8VR4|1|A|A|1464
8VR4|1|A|C|1465
*
8VR4|1|A|G|1496
8VR4|1|A|A|1497
8VR4|1|A|C|1498
8VR4|1|A|A|1499
8VR4|1|A|A|1500
*
8VR4|1|A|U|1517
8VR4|1|A|A|1518

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23