J3_8VRL_001

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VRL_001 not in the Motif Atlas

Geometric match to J3_5TBW_002

Geometric discrepancy: 0.1252

The information below is about J3_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8VRL|1|A|G|27
8VRL|1|A|C|28
*
8VRL|1|A|G|562
8VRL|1|A|U|563
8VRL|1|A|G|564
8VRL|1|A|A|565
8VRL|1|A|A|566
8VRL|1|A|A|567
8VRL|1|A|A|568
8VRL|1|A|G|569
*
8VRL|1|A|C|596
8VRL|1|A|C|597

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein bL20

Chain V

50S ribosomal protein L24