J3_8VRL_002
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GC*GUGAAAAGUACC*GGAGUGAAAGAGUACC
- Length
- 30 nucleotides
- Bulged bases
- 8VRL|1|A|G|591, 8VRL|1|A|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VRL_002 not in the Motif Atlas
- Geometric match to J3_4V9F_012
- Geometric discrepancy: 0.3383
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8VRL|1|A|G|27
8VRL|1|A|C|28
*
8VRL|1|A|G|562
8VRL|1|A|U|563
8VRL|1|A|G|564
8VRL|1|A|A|565
8VRL|1|A|A|566
8VRL|1|A|A|567
8VRL|1|A|A|568
8VRL|1|A|G|569
8VRL|1|A|U|570
8VRL|1|A|A|571
8VRL|1|A|C|572
8VRL|1|A|C|573
*
8VRL|1|A|G|582
8VRL|1|A|G|583
8VRL|1|A|A|584
8VRL|1|A|G|585
8VRL|1|A|U|586
8VRL|1|A|G|587
8VRL|1|A|A|588
8VRL|1|A|A|589
8VRL|1|A|A|590
8VRL|1|A|G|591
8VRL|1|A|A|592
8VRL|1|A|G|593
8VRL|1|A|U|594
8VRL|1|A|A|595
8VRL|1|A|C|596
8VRL|1|A|C|597
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain R
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein uL22
- Chain V
- 50S ribosomal protein L24
Coloring options: