J3_8VRL_017
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 8VRL|1|A|A|2421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VRL_017 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.1209
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VRL|1|A|U|2314
8VRL|1|A|U|2315
8VRL|1|A|G|2316
*
8VRL|1|A|C|2419
8VRL|1|A|U|2420
8VRL|1|A|A|2421
8VRL|1|A|A|2422
8VRL|1|A|C|2423
*
8VRL|1|A|G|2447
8VRL|1|A|G|2448
8VRL|1|A|A|2449
8VRL|1|A|C|2450
8VRL|1|A|A|2451
8VRL|1|A|G|2452
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L9
- Chain Y
- Large ribosomal subunit protein bL28
Coloring options: