J3_8VRL_019

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUC*GAG*CACAAG

Length

12 nucleotides

Bulged bases

8VRL|1|A|C|2558, 8VRL|1|A|A|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VRL_019 not in the Motif Atlas

Homologous match to J3_4WF9_008

Geometric discrepancy: 0.2716

The information below is about J3_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.1

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

8VRL|1|A|C|2519
8VRL|1|A|U|2520
8VRL|1|A|C|2521
*
8VRL|1|A|G|2545
8VRL|1|A|A|2546
8VRL|1|A|G|2547
*
8VRL|1|A|C|2556
8VRL|1|A|A|2557
8VRL|1|A|C|2558
8VRL|1|A|A|2559
8VRL|1|A|A|2560
8VRL|1|A|G|2561

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

Large ribosomal subunit protein uL18

Chain X

50S ribosomal protein L27