J3_8VS9_003
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VS9_003 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1595
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VS9|1|16S|U|943
8VS9|1|16S|G|944
8VS9|1|16S|G|945
8VS9|1|16S|A|946
*
8VS9|1|16S|U|1235
8VS9|1|16S|A|1236
8VS9|1|16S|C|1237
*
8VS9|1|16S|G|1337
8VS9|1|16S|G|1338
8VS9|1|16S|A|1339
8VS9|1|16S|A|1340
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain ETRN
- Transfer RNA; tRNA
- Chain S07
- 30S ribosomal protein S7
- Chain S09
- Small ribosomal subunit protein uS9
- Chain S13
- 30S ribosomal protein S13
- Chain SMPB
- SsrA-binding protein
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