J3_8VS9_009

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8VS9|1|23S|U|686, 8VS9|1|23S|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_009 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1383

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8VS9|1|23S|U|683
8VS9|1|23S|G|684
8VS9|1|23S|A|685
8VS9|1|23S|U|686
8VS9|1|23S|C|687
8VS9|1|23S|U|688
8VS9|1|23S|A|689
*
8VS9|1|23S|U|773
8VS9|1|23S|G|774
8VS9|1|23S|G|775
*
8VS9|1|23S|C|791
8VS9|1|23S|A|792
8VS9|1|23S|A|793
8VS9|1|23S|A|794

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2

Chain L34

50S ribosomal protein L34