3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
8VS9|1|23S|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8VS9_015 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1827
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

8VS9|1|23S|C|2295
8VS9|1|23S|U|2296
8VS9|1|23S|A|2297
8VS9|1|23S|A|2298
8VS9|1|23S|U|2299
*
8VS9|1|23S|A|2317
8VS9|1|23S|G|2318
8VS9|1|23S|G|2319
8VS9|1|23S|U|2320
8VS9|1|23S|U|2321
8VS9|1|23S|A|2322
8VS9|1|23S|G|2323
*
8VS9|1|23S|C|2332
8VS9|1|23S|A|2333
8VS9|1|23S|U|2334
8VS9|1|23S|A|2335
8VS9|1|23S|A|2336
8VS9|1|23S|G|2337

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain 5S
5S ribosomal RNA; 5S rRNA
Chain L05
50S ribosomal protein L5
Chain L18
50S ribosomal protein L18
Chain L27
50S ribosomal protein L27
Chain TMRN
Transfer-messenger RNA; tmRNA

Coloring options:


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