J3_8VS9_016

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8VS9|1|23S|A|2518, 8VS9|1|23S|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_016 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1692

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8VS9|1|23S|C|2517
8VS9|1|23S|A|2518
8VS9|1|23S|U|2519
8VS9|1|23S|C|2520
*
8VS9|1|23S|G|2545
8VS9|1|23S|U|2546
8VS9|1|23S|A|2547
*
8VS9|1|23S|U|2561
8VS9|1|23S|U|2562
8VS9|1|23S|U|2563
8VS9|1|23S|A|2564
8VS9|1|23S|A|2565
8VS9|1|23S|A|2566
8VS9|1|23S|G|2567

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L14

50S ribosomal protein L14