J3_8VS9_032

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8VS9|1|23S|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_032 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1437

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VS9|1|23S|G|297
8VS9|1|23S|G|298
8VS9|1|23S|A|299
8VS9|1|23S|A|300
8VS9|1|23S|G|301
*
8VS9|1|23S|C|316
8VS9|1|23S|G|317
8VS9|1|23S|C|318
8VS9|1|23S|G|319
8VS9|1|23S|A|320
8VS9|1|23S|U|321
8VS9|1|23S|A|322
8VS9|1|23S|C|323
8VS9|1|23S|A|324
8VS9|1|23S|G|325
*
8VS9|1|23S|C|337
8VS9|1|23S|G|338
8VS9|1|23S|U|339
8VS9|1|23S|A|340
8VS9|1|23S|C|341

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L24

50S ribosomal protein L24