J3_8VS9_033

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAU*AUUUAAAGAAA*UCAC

Length

19 nucleotides

Bulged bases

8VS9|1|23S|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|G|1055
8VS9|1|23S|G|1056
8VS9|1|23S|A|1057
8VS9|1|23S|U|1058
*
8VS9|1|23S|A|1080
8VS9|1|23S|U|1081
8VS9|1|23S|U|1082
8VS9|1|23S|U|1083
8VS9|1|23S|A|1084
8VS9|1|23S|A|1085
8VS9|1|23S|A|1086
8VS9|1|23S|G|1087
8VS9|1|23S|A|1088
8VS9|1|23S|A|1089
8VS9|1|23S|A|1090
*
8VS9|1|23S|U|1101
8VS9|1|23S|C|1102
8VS9|1|23S|A|1103
8VS9|1|23S|C|1104

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L10

50S ribosomal protein L10

Chain L11

50S ribosomal protein L11

Chain L36

50S ribosomal protein L36