J3_8VS9_034

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_034 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1998

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8VS9|1|23S|U|1344
8VS9|1|23S|C|1345
8VS9|1|23S|G|1346
8VS9|1|23S|A|1347
8VS9|1|23S|C|1348
8VS9|1|23S|C|1349
*
8VS9|1|23S|G|1382
8VS9|1|23S|A|1383
8VS9|1|23S|A|1384
8VS9|1|23S|A|1385
*
8VS9|1|23S|U|1402
8VS9|1|23S|A|1403

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains