J3_8VS9_036
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8VS9|1|23S|A|2388, 8VS9|1|23S|U|2390, 8VS9|1|23S|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VS9_036 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1001
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VS9|1|23S|G|2282
8VS9|1|23S|C|2283
8VS9|1|23S|A|2284
*
8VS9|1|23S|U|2384
8VS9|1|23S|C|2385
8VS9|1|23S|A|2386
8VS9|1|23S|U|2387
8VS9|1|23S|A|2388
8VS9|1|23S|G|2389
8VS9|1|23S|U|2390
8VS9|1|23S|G|2391
8VS9|1|23S|A|2392
8VS9|1|23S|U|2393
8VS9|1|23S|C|2394
8VS9|1|23S|C|2395
*
8VS9|1|23S|G|2421
8VS9|1|23S|C|2422
8VS9|1|23S|U|2423
8VS9|1|23S|C|2424
8VS9|1|23S|A|2425
8VS9|1|23S|A|2426
8VS9|1|23S|C|2427
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain ETRN
- Transfer RNA; tRNA
- Chain L15
- 50S ribosomal protein L15
- Chain L27
- 50S ribosomal protein L27
- Chain L33
- Large ribosomal subunit protein bL33
- Chain L35
- 50S ribosomal protein L35
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