J3_8VS9_040
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGA*UUUAAAGAAA*UCAC
- Length
- 17 nucleotides
- Bulged bases
- 8VS9|1|23S|A|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VS9|1|23S|G|1055
8VS9|1|23S|G|1056
8VS9|1|23S|A|1057
*
8VS9|1|23S|U|1081
8VS9|1|23S|U|1082
8VS9|1|23S|U|1083
8VS9|1|23S|A|1084
8VS9|1|23S|A|1085
8VS9|1|23S|A|1086
8VS9|1|23S|G|1087
8VS9|1|23S|A|1088
8VS9|1|23S|A|1089
8VS9|1|23S|A|1090
*
8VS9|1|23S|U|1101
8VS9|1|23S|C|1102
8VS9|1|23S|A|1103
8VS9|1|23S|C|1104
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L10
- 50S ribosomal protein L10
- Chain L11
- 50S ribosomal protein L11
- Chain L36
- 50S ribosomal protein L36
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