J3_8VS9_041
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUUCUGGAUUCGAC*GGACGCG*CGCC
- Length
- 26 nucleotides
- Bulged bases
- 8VS9|1|TMRN|U|9, 8VS9|1|TMRN|U|10, 8VS9|1|TMRN|C|11, 8VS9|1|TMRN|U|12, 8VS9|1|TMRN|G|13, 8VS9|1|TMRN|G|14, 8VS9|1|TMRN|U|16, 8VS9|1|TMRN|A|334, 8VS9|1|TMRN|C|335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VS9|1|TMRN|G|7
8VS9|1|TMRN|A|8
8VS9|1|TMRN|U|9
8VS9|1|TMRN|U|10
8VS9|1|TMRN|C|11
8VS9|1|TMRN|U|12
8VS9|1|TMRN|G|13
8VS9|1|TMRN|G|14
8VS9|1|TMRN|A|15
8VS9|1|TMRN|U|16
8VS9|1|TMRN|U|17
8VS9|1|TMRN|C|18
8VS9|1|TMRN|G|19
8VS9|1|TMRN|A|20
8VS9|1|TMRN|C|21
*
8VS9|1|TMRN|G|332
8VS9|1|TMRN|G|333
8VS9|1|TMRN|A|334
8VS9|1|TMRN|C|335
8VS9|1|TMRN|G|336
8VS9|1|TMRN|C|337
8VS9|1|TMRN|G|338
*
8VS9|1|TMRN|C|350
8VS9|1|TMRN|G|351
8VS9|1|TMRN|C|352
8VS9|1|TMRN|C|353
Current chains
- Chain TMRN
- TMRN
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L05
- 50S ribosomal protein L5
- Chain L16
- 50S ribosomal protein L16
- Chain L27
- 50S ribosomal protein L27
- Chain SMPB
- SsrA-binding protein
Coloring options: