J3_8VSA_002

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VSA_002 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.1548

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8VSA|1|16S|C|936
8VSA|1|16S|A|937
8VSA|1|16S|A|938
8VSA|1|16S|G|939
*
8VSA|1|16S|C|1344
8VSA|1|16S|U|1345
8VSA|1|16S|A|1346
8VSA|1|16S|G|1347
8VSA|1|16S|U|1348
8VSA|1|16S|A|1349
8VSA|1|16S|A|1350
*
8VSA|1|16S|U|1372
8VSA|1|16S|G|1373
8VSA|1|16S|A|1374
8VSA|1|16S|A|1375
8VSA|1|16S|U|1376
8VSA|1|16S|A|1377
8VSA|1|16S|C|1378
8VSA|1|16S|G|1379

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S07

30S ribosomal protein S7

Chain S09

Small ribosomal subunit protein uS9