J3_8VSA_004
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8VSA|1|16S|A|958, 8VSA|1|16S|A|975, 8VSA|1|16S|G|976, 8VSA|1|16S|U|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VSA_004 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1054
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VSA|1|16S|U|955
8VSA|1|16S|U|956
8VSA|1|16S|U|957
8VSA|1|16S|A|958
8VSA|1|16S|A|959
8VSA|1|16S|U|960
8VSA|1|16S|U|961
8VSA|1|16S|C|962
*
8VSA|1|16S|G|973
8VSA|1|16S|A|974
8VSA|1|16S|A|975
8VSA|1|16S|G|976
8VSA|1|16S|A|977
8VSA|1|16S|A|978
8VSA|1|16S|C|979
8VSA|1|16S|C|980
8VSA|1|16S|U|981
8VSA|1|16S|U|982
8VSA|1|16S|A|983
8VSA|1|16S|C|984
*
8VSA|1|16S|G|1221
8VSA|1|16S|G|1222
8VSA|1|16S|C|1223
8VSA|1|16S|U|1224
8VSA|1|16S|A|1225
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S09
- Small ribosomal subunit protein uS9
- Chain S10
- 30S ribosomal protein S10
- Chain S13
- 30S ribosomal protein S13
- Chain S14
- Small ribosomal subunit protein uS14
- Chain S19
- 30S ribosomal protein S19
- Chain SMPB
- SsrA-binding protein
- Chain TMRN
- Transfer-messenger RNA; tmRNA
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