J3_8VSA_006
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VSA_006 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1485
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8VSA|1|16S|C|1063
8VSA|1|16S|G|1064
8VSA|1|16S|U|1065
8VSA|1|16S|C|1066
8VSA|1|16S|A|1067
8VSA|1|16S|G|1068
*
8VSA|1|16S|C|1107
8VSA|1|16S|G|1108
8VSA|1|16S|C|1109
8VSA|1|16S|A|1110
8VSA|1|16S|A|1111
8VSA|1|16S|C|1112
8VSA|1|16S|C|1113
*
8VSA|1|16S|G|1187
8VSA|1|16S|A|1188
8VSA|1|16S|U|1189
8VSA|1|16S|G|1190
8VSA|1|16S|A|1191
8VSA|1|16S|C|1192
8VSA|1|16S|G|1193
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S02
- 30S ribosomal protein S2
- Chain S03
- 30S ribosomal protein S3
- Chain S05
- 30S ribosomal protein S5
- Chain S09
- Small ribosomal subunit protein uS9
- Chain S10
- 30S ribosomal protein S10
- Chain S14
- Small ribosomal subunit protein uS14
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