J3_8VSA_032
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8VSA|1|23S|U|34, 8VSA|1|23S|U|448, 8VSA|1|23S|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VSA_032 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1238
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8VSA|1|23S|C|32
8VSA|1|23S|C|33
8VSA|1|23S|U|34
8VSA|1|23S|G|35
*
8VSA|1|23S|C|445
8VSA|1|23S|G|446
8VSA|1|23S|A|447
8VSA|1|23S|U|448
8VSA|1|23S|A|449
8VSA|1|23S|G|450
8VSA|1|23S|U|451
8VSA|1|23S|G|452
8VSA|1|23S|A|453
8VSA|1|23S|A|454
8VSA|1|23S|C|455
8VSA|1|23S|C|456
8VSA|1|23S|A|457
8VSA|1|23S|G|458
8VSA|1|23S|U|459
8VSA|1|23S|A|460
8VSA|1|23S|C|461
*
8VSA|1|23S|G|468
8VSA|1|23S|G|469
8VSA|1|23S|A|470
8VSA|1|23S|A|471
8VSA|1|23S|A|472
8VSA|1|23S|G|473
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L04
- 50S ribosomal protein L4
- Chain L20
- 50S ribosomal protein L20
- Chain L23
- 50S ribosomal protein L23
- Chain L34
- 50S ribosomal protein L34
Coloring options: