J3_8VTU_038

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8VTU|1|1A|U|448, 8VTU|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTU_038 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0552

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8VTU|1|1A|C|32
8VTU|1|1A|U|33
8VTU|1|1A|C|34
8VTU|1|1A|G|35
*
8VTU|1|1A|C|445
8VTU|1|1A|G|446
8VTU|1|1A|A|447
8VTU|1|1A|U|448
8VTU|1|1A|A|449
8VTU|1|1A|G|450
8VTU|1|1A|C|451
8VTU|1|1A|G|452
8VTU|1|1A|C|453
8VTU|1|1A|A|454
8VTU|1|1A|C|455
8VTU|1|1A|C|456
8VTU|1|1A|A|457
8VTU|1|1A|G|458
8VTU|1|1A|U|459
8VTU|1|1A|A|460
8VTU|1|1A|C|461
*
8VTU|1|1A|G|468
8VTU|1|1A|G|469
8VTU|1|1A|A|470
8VTU|1|1A|A|471
8VTU|1|1A|A|472
8VTU|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23