J3_8VTU_059

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

8VTU|1|2A|U|272|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTU_059 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.0926

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8VTU|1|2A|U|269
8VTU|1|2A|A|270
8VTU|1|2A|A|271
8VTU|1|2A|A|271|||A
8VTU|1|2A|C|271|||B
*
8VTU|1|2A|G|271|||V
8VTU|1|2A|G|271|||W
8VTU|1|2A|G|271|||X
8VTU|1|2A|U|271|||Y
8VTU|1|2A|C|271|||Z
8VTU|1|2A|G|272
8VTU|1|2A|U|272|||A
8VTU|1|2A|G|272|||B
*
8VTU|1|2A|C|366
8VTU|1|2A|G|370

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9