J3_8VTU_062

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTU_062 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0708

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8VTU|1|2A|G|1424
8VTU|1|2A|G|1425
8VTU|1|2A|G|1426
8VTU|1|2A|A|1427
8VTU|1|2A|C|1428
8VTU|1|2A|G|1429
*
8VTU|1|2A|C|1564
8VTU|1|2A|C|1565
*
8VTU|1|2A|G|1568
8VTU|1|2A|A|1569
8VTU|1|2A|A|1570
8VTU|1|2A|A|1571
8VTU|1|2A|A|1572
8VTU|1|2A|G|1573
8VTU|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2