J3_8VTU_067

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

8VTU|1|2a|C|48, 8VTU|1|2a|A|50, 8VTU|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTU_067 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0636

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VTU|1|2a|G|46
8VTU|1|2a|C|47
8VTU|1|2a|C|48
8VTU|1|2a|U|49
8VTU|1|2a|A|50
8VTU|1|2a|A|51
8VTU|1|2a|G|52
*
8VTU|1|2a|U|359
8VTU|1|2a|A|360
8VTU|1|2a|G|361
8VTU|1|2a|G|362
8VTU|1|2a|A|363
8VTU|1|2a|A|364
8VTU|1|2a|U|365
8VTU|1|2a|C|366
8VTU|1|2a|U|367
*
8VTU|1|2a|A|393
8VTU|1|2a|G|394
8VTU|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16