J3_8VTV_005

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

8VTV|1|1A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_005 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.0513

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8VTV|1|1A|C|1306
8VTV|1|1A|A|1307
8VTV|1|1A|A|1308
8VTV|1|1A|G|1309
*
8VTV|1|1A|C|1605
8VTV|1|1A|G|1606
8VTV|1|1A|C|1607
8VTV|1|1A|A|1608
8VTV|1|1A|A|1609
8VTV|1|1A|A|1610
8VTV|1|1A|C|1611
*
8VTV|1|1A|G|1620
8VTV|1|1A|U|1621
8VTV|1|1A|G|1622

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34