J3_8VTV_020

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8VTV|1|2A|G|686, 8VTV|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_020 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.0663

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8VTV|1|2A|C|683
8VTV|1|2A|G|684
8VTV|1|2A|A|685
8VTV|1|2A|G|686
8VTV|1|2A|C|687
8VTV|1|2A|U|688
8VTV|1|2A|A|689
*
8VTV|1|2A|U|773
8VTV|1|2A|A|774
8VTV|1|2A|G|775
*
8VTV|1|2A|C|791
8VTV|1|2A|G|792
8VTV|1|2A|A|793
8VTV|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2