3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAUC*GUU*AUUAAAG
Length
14 nucleotides
Bulged bases
8VTV|1|2A|A|2518, 8VTV|1|2A|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8VTV_026 not in the Motif Atlas
Homologous match to J3_8VTW_008
Geometric discrepancy: 0.0421
The information below is about J3_8VTW_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.4
Basepair signature
cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
4

Unit IDs

8VTV|1|2A|C|2517
8VTV|1|2A|A|2518
8VTV|1|2A|U|2519
8VTV|1|2A|C|2520
*
8VTV|1|2A|G|2545
8VTV|1|2A|U|2546
8VTV|1|2A|U|2547
*
8VTV|1|2A|A|2561
8VTV|1|2A|U|2562
8VTV|1|2A|U|2563
8VTV|1|2A|A|2564
8VTV|1|2A|A|2565
8VTV|1|2A|A|2566
8VTV|1|2A|G|2567

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2N
50S ribosomal protein L13
Chain 2O
50S ribosomal protein L14

Coloring options:


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