J3_8VTV_037

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8VTV|1|1A|U|504, 8VTV|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_037 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0594

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VTV|1|1A|G|30
8VTV|1|1A|C|31
*
8VTV|1|1A|G|474
8VTV|1|1A|U|475
8VTV|1|1A|G|476
8VTV|1|1A|A|477
8VTV|1|1A|A|478
8VTV|1|1A|A|479
8VTV|1|1A|A|480
8VTV|1|1A|G|481
8VTV|1|1A|A|482
8VTV|1|1A|A|483
8VTV|1|1A|C|484
*
8VTV|1|1A|G|496
8VTV|1|1A|A|497
8VTV|1|1A|G|498
8VTV|1|1A|U|499
8VTV|1|1A|G|500
8VTV|1|1A|A|501
8VTV|1|1A|A|502
8VTV|1|1A|A|503
8VTV|1|1A|U|504
8VTV|1|1A|A|505
8VTV|1|1A|G|506
8VTV|1|1A|A|507
8VTV|1|1A|G|508
8VTV|1|1A|C|509
8VTV|1|1A|C|510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24