J3_8VTV_038

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8VTV|1|1A|U|448, 8VTV|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_038 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0648

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8VTV|1|1A|C|32
8VTV|1|1A|U|33
8VTV|1|1A|C|34
8VTV|1|1A|G|35
*
8VTV|1|1A|C|445
8VTV|1|1A|G|446
8VTV|1|1A|A|447
8VTV|1|1A|U|448
8VTV|1|1A|A|449
8VTV|1|1A|G|450
8VTV|1|1A|C|451
8VTV|1|1A|G|452
8VTV|1|1A|C|453
8VTV|1|1A|A|454
8VTV|1|1A|C|455
8VTV|1|1A|C|456
8VTV|1|1A|A|457
8VTV|1|1A|G|458
8VTV|1|1A|U|459
8VTV|1|1A|A|460
8VTV|1|1A|C|461
*
8VTV|1|1A|G|468
8VTV|1|1A|G|469
8VTV|1|1A|A|470
8VTV|1|1A|A|471
8VTV|1|1A|A|472
8VTV|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23