J3_8VTV_060

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8VTV|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_060 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0677

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VTV|1|2A|C|297
8VTV|1|2A|G|298
8VTV|1|2A|A|299
8VTV|1|2A|A|300
8VTV|1|2A|G|301
*
8VTV|1|2A|C|316
8VTV|1|2A|G|317
8VTV|1|2A|C|318
8VTV|1|2A|C|319
8VTV|1|2A|A|320
8VTV|1|2A|G|321
8VTV|1|2A|A|322
8VTV|1|2A|G|323
8VTV|1|2A|A|324
8VTV|1|2A|G|325
*
8VTV|1|2A|C|337
8VTV|1|2A|G|338
8VTV|1|2A|U|339
8VTV|1|2A|A|340
8VTV|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24