3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
8VTV|1|2A|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8VTV_060 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.0677
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8VTV|1|2A|C|297
8VTV|1|2A|G|298
8VTV|1|2A|A|299
8VTV|1|2A|A|300
8VTV|1|2A|G|301
*
8VTV|1|2A|C|316
8VTV|1|2A|G|317
8VTV|1|2A|C|318
8VTV|1|2A|C|319
8VTV|1|2A|A|320
8VTV|1|2A|G|321
8VTV|1|2A|A|322
8VTV|1|2A|G|323
8VTV|1|2A|A|324
8VTV|1|2A|G|325
*
8VTV|1|2A|C|337
8VTV|1|2A|G|338
8VTV|1|2A|U|339
8VTV|1|2A|A|340
8VTV|1|2A|G|341

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2F
50S ribosomal protein L4
Chain 2Y
50S ribosomal protein L24

Coloring options:


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