J3_8VTV_061

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

8VTV|1|2A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_061 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0862

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8VTV|1|2A|G|1344
8VTV|1|2A|C|1345
8VTV|1|2A|G|1346
8VTV|1|2A|G|1347
8VTV|1|2A|G|1348
8VTV|1|2A|A|1349
8VTV|1|2A|C|1350
*
8VTV|1|2A|G|1381
8VTV|1|2A|G|1382
8VTV|1|2A|C|1383
8VTV|1|2A|A|1384
8VTV|1|2A|G|1385
*
8VTV|1|2A|C|1402
8VTV|1|2A|C|1403

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23